gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio 1f8282633b Removed plots generation from the BaseRecalibration software Improved AnalyzeCovariates (AC) integration test. Renamed AC test files ending with .grp to .table Implementation: * Removed RECAL_PDF/CSV_FILE from RecalibrationArgumentCollection (RAC). Updated rest of the code accordingly. * Fixed BQSRIntegrationTest to work with new changes		2013-06-19 14:47:56 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Removed plots generation from the BaseRecalibration software	2013-06-19 14:47:56 -04:00
public	Removed plots generation from the BaseRecalibration software	2013-06-19 14:47:56 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Create README.md	2013-06-17 16:03:45 -03:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

gsa-unstable