chartl 1f66738c8e Fix a hashing function bug. Ignore reads with non-reference bases in the pileup. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1842 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-14 19:41:26 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Fix a hashing function bug. Ignore reads with non-reference bases in the pileup.	2009-10-14 19:41:26 +00:00
test/org/broadinstitute/sting	changes to VCF output, and updated MD5's in the integration tests	2009-10-14 18:42:48 +00:00