hanna 1f451e17e5 Changing preloaded index to only "preload" reference sequences on demand. ... Results in drastic lowering of startup cost when multiple BAM files are merged. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3066 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-23 22:02:28 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Changing preloaded index to only "preload" reference sequences on demand.	2010-03-23 22:02:28 +00:00
test/org/broadinstitute/sting	cleaned-up of VariantContextAdapter tests, fixed the double comparisons in equals() in RodGeliText (nice MathUtils.compareDoubles Kiran)	2010-03-23 15:18:30 +00:00