gatk3的最后一个经典版本3.8

Mark A. DePristo 1f1231f47a Implementation of key summarizing algorithm and support routines. UnitTests for support routines. Almost ready to test the summarizer on real difference set.		2011-07-05 23:23:49 -04:00
public	First working version of the DiffNode readers for VCF and BAM files. Unit tests confirm the readers are approximately working. Skeleton of a working DiffObjects walker that will be able to provide detailed information about how exactly two files of the same type differ, so long as the files are supported by the DiffNode structure.	2011-07-04 16:11:42 -04:00
settings	Updated the tribble jar -- this should fix most of the integration test	2011-06-29 01:11:03 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Refactored DiffNode/DiffElement/DiffValue class structure. DiffElement is now a pair of Name -> Value, where value is either a DiffValue or its subclass DiffNode. Code cleaned up, more tests added. DiffEngine is now working, with tests. DiffObjectWalker can now take two VCFs and itemize the difference between the two files correctly and concisely.	2011-07-05 16:13:39 -04:00
ivy.xml	A prototype script and library dependencies to extract a BAM list from a	2011-06-22 22:53:45 +00:00