Eric Banks 1b45f21774 Removing this command-line tool. Purposely not doing this in stable so that users who may still use it have time to find other options. But the docs are no longer on the wiki.		2011-09-28 13:18:32 -04:00
..
tracks	Fixed long-standing bug in tribble index creation	2011-09-20 10:53:18 -04:00
utils	Cleaned up RefMetaDataTracker	2011-07-27 23:25:52 -04:00
RODRecordListImpl.java	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
ReadMetaDataTracker.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
RefMetaDataTracker.java	Updating random walkers to new rod system; removing unused GenotypeAndValidateWalker	2011-08-15 14:05:23 -04:00
ReferenceDependentFeatureCodec.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ReferenceOrderedDatum.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
SeekableRODIterator.java	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
SelfScopingFeatureCodec.java	Refactored a FeatureManager class from RMDTrackBuilder	2011-08-08 14:04:46 -04:00
VariantContextAdaptors.java	Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly.	2011-09-06 20:39:42 -04:00
package-info.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00