Guillermo del Angel 1eee9d512d Make computeConsensusAlleles protected inside IndelGenotypeLikelihoodsCalculationModel so we can use it in unit tests, b) make ConsensusAlleleCounter work if no extended event pileup is present (necessary for ext. event removal)		2012-03-28 15:41:39 -04:00
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R	Further cleanup of R	2012-03-22 21:24:37 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	Make computeConsensusAlleles protected inside IndelGenotypeLikelihoodsCalculationModel so we can use it in unit tests, b) make ConsensusAlleleCounter work if no extended event pileup is present (necessary for ext. event removal)	2012-03-28 15:41:39 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Merge branch 'master' of ssh://gsa1.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-03-13 09:28:16 -04:00
testdata	BQSR Gatherer implementation and integration tests	2012-03-27 13:50:22 -05:00