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Mark DePristo 1ee46e5c06 Collect only the bare essentials in the GATKRunReport 
Now looks like:
<GATK-run-report>
   <id>D7D31ULwTSxlAwnEOSmW6Z4PawXwMxEz</id>
   <start-time>2012/03/10 20.21.19</start-time>
   <end-time>2012/03/10 20.21.19</end-time>
   <run-time>0</run-time>
   <walker-name>CountReads</walker-name>
   <svn-version>1.4-483-g63ecdb2</svn-version>
   <total-memory>85000192</total-memory>
   <max-memory>129957888</max-memory>
   <user-name>depristo</user-name>
   <host-name>10.0.1.10</host-name>
   <java>Apple Inc.-1.6.0_26</java>
   <machine>Mac OS X-x86_64</machine>
   <iterations>105</iterations>
</GATK-run-report>

No longer capturing command line or directory information, to minimize people's concerns with phone home and privacy
 		2012-03-10 20:27:14 -05:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Collect only the bare essentials in the GATKRunReport 2012-03-10 20:27:14 -05:00
test CalibrateGenotypeLikelihoods now emits the position of the variant for debugging 2012-03-09 16:00:07 -05:00