aaron 1eb5f97255 fixed dropping single base intervals from deleteRegion, moving onto performance fixes. ... (stop - start is length-1 on closed intervals, so we need to check greater than OR equals to zero) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2990 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-12 19:14:21 +00:00
..
alignment	oops - didn't mean to check this in	2010-03-02 20:28:22 +00:00
gatk	adding methods to get RODs by name or type in read traversals, performance improvements to RODs for Reads in general, and some more Tribble infrastructure.	2010-03-11 21:13:39 +00:00
oneoffprojects/walkers	PPV and Sensitivity added to validation tool output; support for arbitrary -sample arguments to subset variant contexts by sample	2010-03-10 22:28:31 +00:00
playground/gatk/walkers	Renaming and moving relevant tools into a sequenom directory	2010-03-10 02:31:10 +00:00
utils	fixed dropping single base intervals from deleteRegion, moving onto performance fixes.	2010-03-12 19:14:21 +00:00
BaseTest.java	added root GATKData variable	2010-02-12 15:25:34 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	another test-with-multiple outputs fix	2010-03-04 22:46:15 +00:00