Guillermo del Angel 782453235a Updated VariantEvalIntegrationTest since there's a new column separating nMixed and nComplex in CountVariants ... Misc updates to WholeGenomeIndelCalling.scala Bug fix in VariantEval (may be temporary, need more investigation): if -disc option is used in sites-only vcf's then a null pointer exception is produced, caused by recent introduction of -xl_sf options.		2011-08-20 12:24:22 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Updated VariantEvalIntegrationTest since there's a new column separating nMixed and nComplex in CountVariants	2011-08-20 12:24:22 -04:00