Mark DePristo 8c418a15da Sorting out HMS error handling (fingers crossed) ... -- Check if a traversal error occurred in the last shard -- Catch ExecutionException from the TreeReducer and throw as our HMS execption -- ShardTraverser just throws the exception as formatted by the HMS, rather than wrapping it as a RuntimeException itself -- EngineFeaturesIntegrationTests now uses public exampleFASTA (faster), and does 1000x iterations (slower)		2012-07-25 23:13:12 -04:00
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broadinstitute/sting	Sorting out HMS error handling (fingers crossed)	2012-07-25 23:13:12 -04:00