Mark DePristo 8c418a15da Sorting out HMS error handling (fingers crossed) ... -- Check if a traversal error occurred in the last shard -- Catch ExecutionException from the TreeReducer and throw as our HMS execption -- ShardTraverser just throws the exception as formatted by the HMS, rather than wrapping it as a RuntimeException itself -- EngineFeaturesIntegrationTests now uses public exampleFASTA (faster), and does 1000x iterations (slower)		2012-07-25 23:13:12 -04:00
..
R	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	Sorting out HMS error handling (fingers crossed)	2012-07-25 23:13:12 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Renaming BQSR to BaseRecalibrator	2012-07-23 10:17:17 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00