Khalid Shakir b6bc64a0c8 Cleanup of the utils.broad package. ... Using Picard IoUtils on sample names.		2011-07-01 20:47:03 -04:00
..
commandline	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
gatk	The VariantContext utility method used by SelectVariants wasn't checking the filter status (unfiltered vs. passing filters) and always returned a VC that was passing filters. This is fixed and the md5 from the VCF Streaming test has been re-updated.	2011-06-30 15:26:09 -04:00
jna	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
pipeline	Cleanup of the utils.broad package.	2011-07-01 20:47:03 -04:00
utils	Cleanup of the utils.broad package.	2011-07-01 20:47:03 -04:00
BaseTest.java	Fixing broken paths to the testdata directory throughout the codebase.	2011-06-29 17:36:47 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00