gatk3的最后一个经典版本3.8

Go to file

Eric Banks 1e396af4d0 Two reduce reads updates/fixes: 1. Removing old legacy code that was capping the positional depth for reduced reads to 127. Unfortunately this cap affectively performs biased down-sampling and throws off e.g. FS numbers. Added end to end unit test that depth counts in RR can be higher than max byte. Some md5s change in the RR tests because depths are now (correctly) no longer capped at 127. 2. Down-sampling in ReduceReads was not safe as it could remove het compressed consensus reads. Refactored it so that it can only remove non-consensus reads.		2013-08-01 14:34:59 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Two reduce reads updates/fixes:	2013-08-01 14:34:59 -04:00
public	moved SnpEffUtilUnitTest to public tree	2013-07-30 17:51:40 -04:00
settings	Added function to gatkdocs to specify what VCF field an annotation goes in (INFO or FORMAT)	2013-07-26 15:51:30 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	build.xml: make ant -p output only important build targets	2013-07-19 14:35:00 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/