gatk3的最后一个经典版本3.8

depristo 1df23b0417 Added a definitely inappropriately placed testing of the new fasta seeking system at the bottom of the file -- it's not called but it probably should be moved to somewhere more appropriate. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@141 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-22 19:57:52 +00:00
core/java/src/org/broadinstitute/sting	Added a definitely inappropriately placed testing of the new fasta seeking system at the bottom of the file -- it's not called but it probably should be moved to somewhere more appropriate.	2009-03-22 19:57:52 +00:00
doc	Describe how GATK finds walkers. Change the example to avoid copying the class file into the walkers directory.	2009-03-19 22:41:12 +00:00
playground	New FastaSequenceFile with support for poor-man's seek and querying the next contig name without loading the whole next contig into memory. Vastly speeds up the performance of jumping to distant parts of the genome with the location operator.	2009-03-22 19:43:56 +00:00
settings	Update picard to work with new samtools.	2009-03-20 21:51:26 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Added FourBaseCaller as a jar build target.	2009-03-21 17:59:13 +00:00
ivy.xml	Update picard to work with new samtools.	2009-03-20 21:51:26 +00:00