ebanks 1dd9996f3a New realigner now completely uses bytes, plus misc fixes. Still not ready for use. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2719 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-28 04:17:20 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	New realigner now completely uses bytes, plus misc fixes. Still not ready for use.	2010-01-28 04:17:20 +00:00
test/org/broadinstitute/sting	V3 of VariantContext. Support for Genotypes and NO_CALL alleles. QUAL fields fully implemented. Can parse VCF records and dbSNP. More complete validation. Detailed testing routines for VariantContext and Allele.	2010-01-28 04:10:16 +00:00