hanna 1daa011387 Interval-based traversals were bleeding file handles. Fixed. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@541 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-26 18:35:54 +00:00
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dataSources	Introduce new index-based fasta reader. Clean up MicroManager code, pushing necessary code back into TraversalEngine.	2009-04-24 19:40:21 +00:00
executive	More cleanup.	2009-04-26 17:46:52 +00:00
iterators	Introduce new index-based fasta reader. Clean up MicroManager code, pushing necessary code back into TraversalEngine.	2009-04-24 19:40:21 +00:00
refdata	updated interface	2009-04-21 21:07:20 +00:00
traversals	Interval-based traversals were bleeding file handles. Fixed.	2009-04-26 18:35:54 +00:00
walkers	Renamed traversal by "interval" to "locusWindow"	2009-04-26 02:26:08 +00:00
GenomeAnalysisTK.java	Inadvertently removed interval file support in new TbLbR. Fixed.	2009-04-26 18:15:42 +00:00
LocusContext.java	1. Added a by-interval traversal.	2009-04-24 04:33:35 +00:00
WalkerManager.java	Refactor common functionality out of WalkerManager and into JVMUtils and PathUtils. Add support for loading walkers from a jar.	2009-03-30 23:20:55 +00:00