chartl 1da45cffb3 New: ... Minor changes to CoverageAndPowerWalker bootstrapping (faster selection of indeces). Entirely new Aritifical Pool Walker (ArtificialPoolWalkerMk2), will likely replace ArtificialPoolWalker on the next commit. Adapted the method of sampling, and added a helper context class: ArtificialPoolContext which carries much of the burden of calculation and data handling for the walker. The walker itself maps and reduces ArtificialPoolContexts. Cheers! git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1461 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-26 21:42:35 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	New:	2009-08-26 21:42:35 +00:00
test/org/broadinstitute/sting	vcf changes from Richards comments, fixed a test case	2009-08-25 14:32:16 +00:00