gatk3的最后一个经典版本3.8

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Eric Banks 1d97b4a191 Improved tail merging: now tails can be merged to branches that are not entirely reference. This is useful for e.g. cases where there are SNPs on insertions. Before tails were forced to be merged (incorrectly) only to a reference node, but now they can be merged to any path in the graph from which they directly branch. Also, I've transferred over Ryan's code to refuse to process kmer sizes such that there are non-unique kmers in the reference sequence with them.		2014-07-10 08:57:01 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Improved tail merging: now tails can be merged to branches that are not entirely reference.	2014-07-10 08:57:01 -04:00
public	Remove junit imports in the test suite	2014-07-09 12:09:27 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed minor pom.xml line that was out of place after sortpom.	2014-06-26 01:01:19 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/