depristo 8f461d3c40 Critical bug fix for VariantEval dbSNP calculations. Moved the system over to the new improved ROD iterators, resulting in dbSNP rates jumping 5% or so, due to masking of true SNPs by preceding indels. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2274 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-07 03:36:38 +00:00
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varianteval	Critical bug fix for VariantEval dbSNP calculations. Moved the system over to the new improved ROD iterators, resulting in dbSNP rates jumping 5% or so, due to masking of true SNPs by preceding indels.	2009-12-07 03:36:38 +00:00
variantstovcf	changes to VCF output, and updated MD5's in the integration tests	2009-10-14 18:42:48 +00:00
ClipReadsWalkersIntegrationTest.java	some integration test clean-up	2009-12-02 21:11:02 +00:00
ConcordanceTruthTableTest.java	adding an extra bit of data to come out of CTT (number of chips with actual data)	2009-11-19 17:46:10 +00:00
HapmapPoolAllelicInfoIntegrationTest.java	commenting out some broken integration tests, to be uncommented if needed.	2009-12-02 23:13:24 +00:00