hanna 1d50fc7087 Misc bug fixes: fix tracking of nInsertions with sample-split pileup constructor. Fix performance ... issue building up pileups from pileups of individual sample data. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3598 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-20 20:32:27 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Misc bug fixes: fix tracking of nInsertions with sample-split pileup constructor. Fix performance	2010-06-20 20:32:27 +00:00
test/org/broadinstitute/sting	GATK now uses a optimized indexing scheme in Tribble. 5x or more performance gain on files with many genotypes. Updated integrationtest that was failing and was clearly wrong. DB=; isn't a valid annotation.	2010-06-19 21:36:41 +00:00