gatk3的最后一个经典版本3.8

Mark DePristo 1d4eb46606 Efficient reading of genotype fields v1 ... -- decodeIntArray in BCF2 decoder allows us to more efficiently read ints and int[] from stream directly into Genotype object -- Code cleanup / contracts added were appropriate -- V2 will have a yet more optimized path...		2012-06-14 16:42:26 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	Efficient reading of genotype fields v1	2012-06-14 16:42:26 -04:00
settings	Testing of BCF codec	2012-05-24 10:57:01 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	ant fasttest: for when you just can't wait	2012-06-01 15:17:18 -04:00
ivy.xml	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00