Mark DePristo e1293f0ef2 GSA-507: Thread monitoring refactored so it can work without a thread factory ... -- Old version StateMonitoringThreadFactory refactored into base class ThreadEfficiencyMonitor and subclass EfficiencyMonitoringThreadFactory. -- Base class is used by LinearMicroScheduler to monitor performance of GATK in single threaded mode -- MicroScheduler now handles management of the efficiency monitor. Includes master thread in monitor, meaning that reduce is now included for both schedulers		2012-08-22 16:48:01 -04:00
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net/sf	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
org/broadinstitute/sting	GSA-507: Thread monitoring refactored so it can work without a thread factory	2012-08-22 16:48:01 -04:00