Mark DePristo 1ccea866d8 VariantEval now includes -keepAC0 argument to include sites with alt alleles but AC 0 in analyses ... -- Updated EvalModules to work with new paramter -- adding test file for keepAC0 to public/testdata and integration tests		2012-04-04 15:37:12 -04:00
..
R	Further cleanup of R	2012-03-22 21:24:37 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	VariantEval now includes -keepAC0 argument to include sites with alt alleles but AC 0 in analyses	2012-04-04 15:37:12 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Added more primitives to GATK Report Column Type	2012-03-28 09:07:54 -04:00
testdata	VariantEval now includes -keepAC0 argument to include sites with alt alleles but AC 0 in analyses	2012-04-04 15:37:12 -04:00