gatk3的最后一个经典版本3.8

Jacob Silterra 1cc0b48caa Abstract connection to MongoDB so we can specify it through JSON file. Include 2 JSON spec files in GenomeAnalysisTK.jar ... Create MongoDBManager, which keeps track of connections based on Locator class. Locators can be instantiated directly, or read from JSON files (NA12878DBArgumentCollection uses the GSon library)		2012-11-27 17:44:55 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Merging latest CMI updates with UNSTABLE	2012-11-27 09:08:00 -05:00
public	Merged bug fix from Stable into Unstable	2012-11-27 14:41:07 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Abstract connection to MongoDB so we can specify it through JSON file. Include 2 JSON spec files in GenomeAnalysisTK.jar	2012-11-27 17:44:55 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00