gatk-3.8

History

Khalid Shakir fcb0eca203 Now passing in the path to the GATK directory to tests. Changed tests and scripts to use gatkdir full path instead of relative testdata/qscripts symbolic links. Although symlinks not created, left the symlink deletion script execution with a comment about future removal. Re-enabled example UG pipeline queue test. Replaced all hardcoded strings of {public,private}/testdata with BaseTest variables. Refactored temp list creation method from ListFileUtilsUnitTest to BaseTest.createTempListFile. Removed list files with hardcoded paths, now using createTempListFile instead with private test dir variable.	2014-09-02 01:40:59 +08:00
..
main	Update VQSR Rnd BQSR script generation code for compatibility with latest ggplot version. Update queueJobReport.R and public/gsalib/src/R/R/gsa.variantqc.utils.R also	2014-07-09 15:36:58 -04:00
test/scala/org/broadinstitute/gatk/queue	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00

Khalid Shakir fcb0eca203 Now passing in the path to the GATK directory to tests.

Changed tests and scripts to use gatkdir full path instead of relative testdata/qscripts symbolic links.
Although symlinks not created, left the symlink deletion script execution with a comment about future removal.
Re-enabled example UG pipeline queue test.
Replaced all hardcoded strings of {public,private}/testdata with BaseTest variables.
Refactored temp list creation method from ListFileUtilsUnitTest to BaseTest.createTempListFile.
Removed list files with hardcoded paths, now using createTempListFile instead with private test dir variable.

2014-09-02 01:40:59 +08:00

main

Update VQSR Rnd BQSR script generation code for compatibility with latest ggplot version. Update queueJobReport.R and public/gsalib/src/R/R/gsa.variantqc.utils.R also

2014-07-09 15:36:58 -04:00

test/scala/org/broadinstitute/gatk/queue

Now passing in the path to the GATK directory to tests.

2014-09-02 01:40:59 +08:00