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VectorPairHMM
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Update pom versions to mark the start of GATK 3.3 development
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2014-07-17 12:09:33 -04:00 |
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c
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After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.
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2014-05-19 17:36:41 -04:00 |
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chainFiles
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The contig is named MT not M in b36. Delivers PT68890442.
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2014-04-08 10:03:47 -04:00 |
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doc
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Refactored maven directories and java packages replacing "sting" with "gatk".
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2014-05-19 17:36:39 -04:00 |
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external-example
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Various fixes for package tests.
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2014-09-04 15:30:31 -04:00 |
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gatk-engine
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Now passing in the path to the GATK directory to tests.
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2014-09-02 01:40:59 +08:00 |
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gatk-queue
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Now passing in the path to the GATK directory to tests.
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2014-09-02 01:40:59 +08:00 |
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gatk-queue-extensions-generator
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Moved arguments controlling options in output files into the engine
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2014-09-05 21:18:11 -04:00 |
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gatk-queue-extensions-public
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Moved arguments controlling options in output files into the engine
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2014-09-05 21:18:11 -04:00 |
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gatk-root
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Added -writeFullFormat engine-level argument
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2014-09-17 08:25:27 -04:00 |
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gatk-tools-public
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This warning message actually happens all the time in AssessNA12878 when we subset down to biallelic events but I've verified that it is working as intended. Moving the logging level up to debug.
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2014-09-29 11:40:38 -04:00 |
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gatk-utils
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Now passing in the path to the GATK directory to tests.
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2014-09-02 01:40:59 +08:00 |
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gsalib
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Update pom versions to mark the start of GATK 3.3 development
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2014-07-17 12:09:33 -04:00 |
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java/config
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Refactored maven directories and java packages replacing "sting" with "gatk".
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2014-05-19 17:36:39 -04:00 |
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package-tests
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Various fixes for package tests.
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2014-09-04 15:30:31 -04:00 |
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perl
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Fixing the liftover script to not require strict VCF header validation.
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2013-11-07 09:02:17 -05:00 |
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repo
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Added -writeFullFormat engine-level argument
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2014-09-17 08:25:27 -04:00 |
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src/main/scripts/shell
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For now, executing the delete_maven_links.sh just ahead of creating the symbolic links during the process-test-resources phase.
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2014-06-25 02:32:15 +08:00 |
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pom.xml
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Update pom versions to mark the start of GATK 3.3 development
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2014-07-17 12:09:33 -04:00 |
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