gatk3的最后一个经典版本3.8

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Khalid Shakir 1cb4b99548 Added faster built executable, non-packaged jars. Moved top level target symlinks to package jar files to under target/package. Executable jar files are placed under target/executable with the new target[/lib] directories. Under top level target, symlinks to either the package or the executable jars replace what was a symlink to the package jar path. Allow disabling of the shade package. ant-bridge.sh by default only builds executable jars, and doesn't package by default, as did the old ant build.xml. Added a new package_path.sh utility script for other scripts to use instead of anything in the target folder.		2014-11-05 00:30:46 +08:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
public	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/