gatk3的最后一个经典版本3.8

Mark DePristo 1ca13f9581 Fundamentally better model for the NanoScheduler ... -- Now each map job reads a value, performs map, and does as much reducing as possible. This ensures that we scale performance with the nct value, so -nct 2 should result in 2x performance, -nct 3 3x, etc. All of this is accomplished using exactly NCT% of the CPU of the machine. -- Has the additional value of actually simplifying the code -- Resolves a long-standing annoyance with the nano scheduler.		2012-12-19 09:31:31 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Optimizations for applying BQSR table with PrintReads	2012-12-17 16:47:27 -05:00
public	Fundamentally better model for the NanoScheduler	2012-12-19 09:31:31 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Refactored entire NA12878KB to allow us to easily build a na12878kb.jar for IGV integration	2012-11-29 14:38:09 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00