Mauricio Carneiro 1c4774c475 Static versions of the hard clipping utilities ... For simplified access to the hard clipping utilities. No need to create a ReadClipper object if you are not doing multiple complicated clipping operations, just use the static methods. examples: ReadClipper.hardClipLowQualEnds(2); ReadClipper.hardClipAdaptorSequence();		2011-12-20 17:48:39 -05:00
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R	Protect ourselves when iteration is present but there's only a single iteration in queueJobReport.R	2011-12-19 10:08:38 -05:00
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java	Static versions of the hard clipping utilities	2011-12-20 17:48:39 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	General improvements to Queue	2011-12-20 14:05:09 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00