Guillermo del Angel 51a9ce28e1 Merge remote-tracking branch 'unstable/master' into develop		2012-10-31 10:29:48 -04:00
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bqsr	DelocalizedBaseRecalibrator becomes the BaseRecalibrator.	2012-10-29 12:53:39 -04:00
compression/reducereads	Updating RR integration tests	2012-10-23 11:26:26 -04:00
genotyper	The default value for --contamination_fraction_to_filter is now 0.05 (5%) in both UG and HC. Users of GATK-lite get pushed down to 0% by default (since it's not enabled) or get a user error if they try to set it.	2012-10-26 01:04:51 -04:00
haplotypecaller	The default value for --contamination_fraction_to_filter is now 0.05 (5%) in both UG and HC. Users of GATK-lite get pushed down to 0% by default (since it's not enabled) or get a user error if they try to set it.	2012-10-26 01:04:51 -04:00