gatk-3.8

History

Christopher Hartl 1be8a88909 Changes: 1) GATKArgumentCollection has a command to turn off randomization if setting the seed isn't enough. Right now it's only hooked into RankSumTest. 2) RankSumTest now can be passed a boolean telling it whether to use a dithering or non-randomizing comparator. Unit tested. 3) VariantsToBinaryPed can now output in both individual-major and SNP-major mode. Integration test. 4) Updates to PlinkBed-handling python scripts and utilities. 5) Tool for calculating (LD-corrected) GRMs put under version control. This is analysis for T2D, but I don't want to lose it should something happen to my computer.	2012-10-03 16:02:42 -04:00
..
net/sf	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
org/broadinstitute/sting	Changes:	2012-10-03 16:02:42 -04:00

Christopher Hartl 1be8a88909 Changes:

1) GATKArgumentCollection has a command to turn off randomization if setting the seed isn't enough. Right now it's only hooked into RankSumTest.
 2) RankSumTest now can be passed a boolean telling it whether to use a dithering or non-randomizing comparator. Unit tested.
 3) VariantsToBinaryPed can now output in both individual-major and SNP-major mode. Integration test.
 4) Updates to PlinkBed-handling python scripts and utilities.
 5) Tool for calculating (LD-corrected) GRMs put under version control. This is analysis for T2D, but I don't want to lose it should something happen to my computer.

2012-10-03 16:02:42 -04:00

net/sf

Cleanup of VCF header lines and constants, BCF2 bugfixes

2012-06-21 15:16:31 -04:00

org/broadinstitute/sting

Changes:

2012-10-03 16:02:42 -04:00