Ryan Poplin 1bdf17ef53 Reworking of how the likelihood calculation is organized in the HaplotypeCaller to facilitate the inclusion of per allele downsampling. We now use the downsampling for both the GL calculations and the annotation calculations.		2012-12-02 11:58:32 -05:00
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src/org/broadinstitute/sting	Reworking of how the likelihood calculation is organized in the HaplotypeCaller to facilitate the inclusion of per allele downsampling. We now use the downsampling for both the GL calculations and the annotation calculations.	2012-12-02 11:58:32 -05:00
test/org/broadinstitute/sting	Updating HC integration tests because experimental, HC-specific annotations have been removed.	2012-11-26 12:20:07 -05:00