asivache 1bd4c0077c Now that ROD system supports overlapping RODs, we do not need rodRefSeq to be too smart and read in all the overlapping records (transcripts) on its own; leave it to the generic ROD mechanism. ... PARTIAL commit; new, simpler rodRefSeq will reappear in a seq. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1694 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-23 18:11:16 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Now that ROD system supports overlapping RODs, we do not need rodRefSeq to be too smart and read in all the overlapping records (transcripts) on its own; leave it to the generic ROD mechanism.	2009-09-23 18:11:16 +00:00
test/org/broadinstitute/sting	fixing VariantEvalWalkerIntegrationTest md5 sums, a couple comment changes, and a little bit of cleanup	2009-09-22 20:54:47 +00:00