gatk3的最后一个经典版本3.8

Mauricio Carneiro 1b75663178 BQSR Gatherer implementation and integration tests ... * restructured the hash tables into one class (RecalibrationReport) that has all the functionality for the different tables and key managers * optmized empirical qual calculation when merging recalibration reports * centralized the quality score quantization functionalities * unified the creating/loading of all the key manager/hash table structures. * added unit tests for the gatherer (disabled because gatk report needs to be sorted for automated testing) * added integration tests for BQSR and on-the-fly recalibration		2012-03-27 13:50:22 -05:00
public	BQSR Gatherer implementation and integration tests	2012-03-27 13:50:22 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	Updated license year	2012-03-27 14:32:02 -04:00
build.xml	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00