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.gitignore
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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JNI_README
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Same log message as before - forgot -a option
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2014-01-16 21:40:04 -08:00 |
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Makefile
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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avx_function_instantiations.cc
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Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.
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2014-01-21 09:30:15 -08:00 |
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baseline.cc
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Added support for dynamic selection between AVX and un-vectorized C++,
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2014-01-18 11:07:23 -08:00 |
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define-double.h
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Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.
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2014-01-21 09:30:15 -08:00 |
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define-float.h
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Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.
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2014-01-21 09:30:15 -08:00 |
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define-sse-double.h
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Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.
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2014-01-21 09:30:15 -08:00 |
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define-sse-float.h
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Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.
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2014-01-21 09:30:15 -08:00 |
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headers.h
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.cc
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.h
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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pairhmm-1-base.cc
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Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.
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2014-01-21 09:30:15 -08:00 |
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pairhmm-template-kernel.cc
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Split the inner loop to avoid the overhead incurred when -fPIC flag is enabled.
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2014-01-21 11:47:30 -08:00 |
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pairhmm-template-main.cc
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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run.sh
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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shift_template.c
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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sse_function_instantiations.cc
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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template.h
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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utils.cc
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Split the inner loop to avoid the overhead incurred when -fPIC flag is enabled.
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2014-01-21 11:47:30 -08:00 |
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utils.h
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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vector_defs.h
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Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.
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2014-01-21 09:30:15 -08:00 |
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vector_function_prototypes.h
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1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the
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2014-01-20 08:03:42 -08:00 |
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