gatk3的最后一个经典版本3.8

Mauricio Carneiro 1acf7945c5 Fixed hard clipped cigar and alignment start ... * Hard clipped Cigar now includes all insertions that were hard clipped and not the deletions. * The alignment start is now recalculated according to the new hard clipped cigar representation		2011-09-22 14:51:14 -04:00
public	Fixed hard clipped cigar and alignment start	2011-09-22 14:51:14 -04:00
settings	Accidentally committed unclean tribble jar to repo	2011-09-21 10:16:17 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	To work around potential problem with invalid javax.mail 1.4.1 in ivy cache, added explicit javax.mail 1.4.4 along with build.xml code to remove 1.4.1.	2011-09-20 00:14:35 -04:00
ivy.xml	To work around potential problem with invalid javax.mail 1.4.1 in ivy cache, added explicit javax.mail 1.4.4 along with build.xml code to remove 1.4.1.	2011-09-20 00:14:35 -04:00