Mark DePristo 6b639f51f0 Finalizing new exact model and tests ... -- New capabilities in IndependentAllelesDiploidExactAFCalc to actually apply correct theta^n.alt.allele prior. -- Tests that theta^n.alt.alleles is being applied correctly -- Bugfix: keep in logspace when computing posterior probability in toAFCalcResult in AFCalcResultTracker.java -- Bugfix: use only the alleles used in genotyping when assessing if an allele is polymorphic in a sample in UnifiedGenotyperEngine		2012-10-15 07:53:57 -04:00
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src/org/broadinstitute/sting	AFCalcs must be made by factory method now	2012-10-15 07:53:56 -04:00
test/org/broadinstitute/sting/gatk/walkers	Finalizing new exact model and tests	2012-10-15 07:53:57 -04:00