Eric Banks 1a4b112865 Merge branch 'master' of github.com:broadinstitute/gsa-unstable		2013-01-07 15:00:35 -05:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	…
chainFiles	…
doc	…
java	Collapse the PerReadAlleleLikelihoodMap classes into 1 now that Lite is gone	2013-01-07 14:55:21 -05:00
keys	…
packages	Move VCF/BCF2/VariantContext to new standalone org.broadinstitute.variant package	2012-12-19 10:25:22 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Moved processing pipelines to private	2013-01-07 14:49:57 -05:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00