gatk-3.8/protected/java
Mark DePristo 1917d55dc2 Bugfix for DeBruijnAssembler: don't fail when read length > haplotype length
-- The previous version would generate graphs that had no reference bases at all in the situation where the reference haplotype was < the longer read length, which would cause the kmer size to exceed the reference haplotype length.  Now return immediately with a null graph when this occurs as opposed to continuing and eventually causing an error
2013-03-26 10:12:17 -04:00
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src/org/broadinstitute/sting Bugfix for DeBruijnAssembler: don't fail when read length > haplotype length 2013-03-26 10:12:17 -04:00
test/org/broadinstitute/sting Vastly more powerful, cleaner graph simplification approach 2013-03-23 17:40:55 -04:00