ebanks 1905b5defa Hash by chromosome for now to reduce memory. This is a temporary solution until we decide how to reture the Injector for good. ... Also, with Picard's latest changes, we need to make sure we don't double-close the sam writer. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1779 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-07 20:06:25 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Hash by chromosome for now to reduce memory. This is a temporary solution until we decide how to reture the Injector for good.	2009-10-07 20:06:25 +00:00
test/org/broadinstitute/sting	GELI_BINARY is now functional, and can be used as a variant type in SSG (-vf=GELI_BINARY). Also fixed the max mapping quality column in both GELI output formats, we haven't been correctly outputing up until now.	2009-10-07 18:20:34 +00:00