22 lines
1.1 KiB
XML
22 lines
1.1 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<package name="AnalyzeCovariates">
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<executable name="AnalyzeCovariates">
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<main-class name="org.broadinstitute.sting.analyzecovariates.AnalyzeCovariates" />
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<resource-bundle file="StingText.properties" />
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<dependencies>
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<!-- Recalibration analysis script -->
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<class name="org.broadinstitute.sting.analyzecovariates.AnalyzeCovariates" />
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<class name="org.broadinstitute.sting.gatk.walkers.recalibration.DinucCovariate" />
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<class name="org.broadinstitute.sting.gatk.walkers.recalibration.QualityScoreCovariate" />
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<class name="org.broadinstitute.sting.gatk.walkers.recalibration.CycleCovariate" />
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<class name="org.broadinstitute.sting.gatk.walkers.recalibration.ReadGroupCovariate" />
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<class name="org.broadinstitute.sting.gatk.walkers.recalibration.TileCovariate" />
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</dependencies>
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</executable>
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<resources>
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<!-- Supplemental scripts for graph generation, etc. -->
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<file name="R/plot_residualError_OtherCovariate.R" />
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<file name="R/plot_residualError_QualityScoreCovariate.R" />
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</resources>
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</package>
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