kshakir d185c2961f Added pipeline for calling FCP in batches called MultiFullCallingPipeline. ... Bug smashes for the MCFP: Synchronized access to LSF library and modifications to the QGraph. If values are missing from the graph with -run make sure to exit with a non-zero. Refactored QGraph to pre-generate a unique Int for each QNode speeding up getHashCode/equals inside the graph. Added jobPriority and removed jobLimitSeconds from QFunction. All scatter gather is by default in a single sub directory queueScatterGather. Moved some FCPTest into BaseTest/PipelineTest for use by MFCPTest. Rev'ed the 1000G bams used for validation from v1 to v2 and added code to look for the bams before running other tests. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5247 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-15 18:26:14 +00:00
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net/sf/picard/reference	A few minor modifications masquerading as significant changes according to	2011-02-03 17:59:19 +00:00
org/broadinstitute/sting	Added pipeline for calling FCP in batches called MultiFullCallingPipeline.	2011-02-15 18:26:14 +00:00