kshakir 79725f2d9c Excluding the QFunction log files from the set of files to delete on completion. ... When a QGraph is empty displaying a warning instead of crashing with an JGraph internal assertion error. Cleaned up code using the Log4J root logger and explicitly talking to a logger for Sting. When integration tests are run detecting that the logger has already been setup so that messages aren't logged twice. Updated from Ivy 2.2.0-rc1 to 2.2.0. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4707 348d0f76-0448-11de-a6fe-93d51630548a		2010-11-18 20:22:01 +00:00
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DispatchJobRunner.scala	Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality.	2010-10-06 18:29:56 +00:00
FunctionEdge.scala	Instead of the pipeline's cleaner only writing BAMs with the target intervals, now pulling the list of contigs from the target intervals and outputing reads in those contigs.	2010-10-22 22:22:30 +00:00
InProcessRunner.scala	- After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list.	2010-10-21 06:37:28 +00:00
JobRunner.scala	Instead of the pipeline's cleaner only writing BAMs with the target intervals, now pulling the list of contigs from the target intervals and outputing reads in those contigs.	2010-10-22 22:22:30 +00:00
LsfJobRunner.scala	Fixed bug where the command directory was not being set to an absolute path, leading LSF to write some .done files to /tmp.	2010-11-15 17:59:39 +00:00
MappingEdge.scala	Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality.	2010-10-06 18:29:56 +00:00
QEdge.scala	Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality.	2010-10-06 18:29:56 +00:00
QGraph.scala	Excluding the QFunction log files from the set of files to delete on completion.	2010-11-18 20:22:01 +00:00
QGraphSettings.scala	Queue UI Improvements:	2010-10-26 19:49:08 +00:00
QNode.scala	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
RunnerStatus.scala	QScript authors can now tag functions as intermediate. Functions tagged as intermediate will be skipped unless another function in the graph needs their output.	2010-10-18 22:11:14 +00:00
ShellJobRunner.scala	Instead of the pipeline's cleaner only writing BAMs with the target intervals, now pulling the list of contigs from the target intervals and outputing reads in those contigs.	2010-10-22 22:22:30 +00:00