Eric Banks 18728ec5bd Updates to the bundle script: ... 1. Add the symbolic 'current' link for the new bundle dir 2. Don't gzip and copy .out files 3. Don't call chr20 SNPs on the example BAM because it's now just a few reads on chr1		2012-12-18 11:16:42 -05:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	…
chainFiles	…
doc	…
java	Optimization to TraverseReadsNano	2012-12-18 10:14:47 -05:00
keys	…
packages	Update GATK packaging settings to package arbitrary resources	2012-11-28 15:26:05 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Updates to the bundle script:	2012-12-18 11:16:42 -05:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00