Mark DePristo 184030dd56 RefMetaDataTracker no longer automagically converts inputs to VariantContexts ... This was no longer working properly given that DBSNP indels needed to be moved around. The adaptor system is being refactored and you will need to convert files from X -> VCF for many tools to work.		2011-08-01 15:21:16 -04:00
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R	Moved gsalib sources from private/ to public/	2011-07-27 12:29:43 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	RefMetaDataTracker no longer automagically converts inputs to VariantContexts	2011-08-01 15:21:16 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Updated to reflect new parse() function	2011-07-30 15:34:20 -04:00
testdata	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00