gatk3的最后一个经典版本3.8

Joel Thibault 182a950202 ValidatingPileup was renamed to CheckPileup		2013-02-15 11:56:19 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Merge pull request #37 from broadinstitute/rp_left_alignment_hc_contract_GSA-771	2013-02-15 08:32:45 -08:00
public	ValidatingPileup was renamed to CheckPileup	2013-02-15 11:56:19 -05:00
settings	Refactored GATKDocs categories some more ( GSATDG-62 )	2013-02-13 16:49:18 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00