gatk3的最后一个经典版本3.8

Mark DePristo 1828d33a5a Bugfix to AssessNA12878 ... -- Wasn't handling indel overlaps correctly in SiteIterator.getSitesBefore, causing it to incorrectly skip variants underlying indels (the getSitesBefore was considering both start and stop [not the correct behavior]) causing it to only get sites up to the first record whose stop overlapped the requested start.		2012-12-02 11:09:15 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Updating md5 for UG	2012-12-01 14:24:19 -05:00
public	Minor cleanup of SAMDataSource as part of my system review	2012-11-30 15:04:41 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Refactored entire NA12878KB to allow us to easily build a na12878kb.jar for IGV integration	2012-11-29 14:38:09 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00