gatk3的最后一个经典版本3.8

Mark DePristo 17ca543937 More ExactModel cleanup ... -- UnifiedGenotyperEngine no longer keeps a thread local double[2] array for the normalized posteriors array. This is way heavy-weight compared to just making the array each time. -- Added getNormalizedPosteriorOfAFGTZero and getNormalizedPosteriorOfAFzero to AFResult object. That's the place it should really live -- Add tests for priors, uncovering bugs in the contracts of the tri-allelic priors w.r.t. the AC of the MAP. Added TODOs		2012-10-03 19:55:11 -07:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Count the number of evaluations in AFResult; expand unit tests	2012-10-03 19:55:11 -07:00
public	More ExactModel cleanup	2012-10-03 19:55:11 -07:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00