hanna fece2167b3 Prototype implementation of protoshard merging when protoshard n and protoshard ... n+1 completely overlap. Gives a small but consistent performance increase in non-intervaled whole exome traversals (2.79min original, 2.69min revised). Needs a more in depth analysis of optimal shard sizing to determine a true optimum. Also renamed a variable because Khalid disapproved of my naming choices. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5595 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-08 02:09:14 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Prototype implementation of protoshard merging when protoshard n and protoshard	2011-04-08 02:09:14 +00:00
test	Enable BAM OTF index writing by default.	2011-04-07 23:44:25 +00:00