Mauricio Carneiro 16caca0822 BLASR BAMs and new BWA parameters ... *Added the functions to turn a BLASR generated BAM file into a usable BAM file. *Modified the bwa parameters according to test results from NA12878 pb2k dataset.		2011-08-24 17:04:07 -04:00
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R	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-08-24 15:18:58 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	BLASR BAMs and new BWA parameters	2011-08-24 17:04:07 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00